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In big data transmission, when the network traffic is too large or the network topology is complex, network congestion may occur, leading to an increase in communication transmission delay. In order to optimize the data transmission efficiency of the communication network, a big data communication transmission delay control system based on PCIE bus is designed. Design a big data transceiver, communication conversion module, and communication interrupt controller under the PCIE bus core structure, build a delay control terminal, and combine the big data communication register and delay state estimator to achieve the design of the transmission delay control hardware system. Calculate the specific numerical level of transmission delay in the communication data phase space, and complete the prediction of big data communication transmission delay. Based on the defined conditions of the big data communication sequence, feedback information related to the communication transmission delay state is obtained, and based on this, specific control schemes are determined to complete the design of the big data communication transmission delay control system based on the PCIE bus. The experimental results show that the application of the PCIE bus control system can control the delay of big data communication within the range of 0-0.20ms, without causing a decrease in the instantaneous response rate of data information due to excessive delay, and the packet loss rate of data transmission is less than%, which meets the practical application requirements.